Serveur d'exploration sur la rouille du peuplier

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.

Identifieur interne : 000026 ( Main/Exploration ); précédent : 000025; suivant : 000027

Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.

Auteurs : Gregory Bonito [États-Unis] ; Khalid Hameed [États-Unis] ; Merje Toome-Heller [Nouvelle-Zélande] ; Rosanne Healy [États-Unis] ; Chantal Reid [États-Unis] ; Hui-Ling Liao [États-Unis] ; M Catherine Aime [États-Unis] ; Christopher Schadt [États-Unis] ; Rytas Vilgalys [États-Unis]

Source :

RBID : pubmed:28402786

Descripteurs français

English descriptors

Abstract

Among fungi isolated from healthy root mycobiomes of Populus, we discovered a new endorrhizal fungal species belonging to the rust lineage Pucciniomycotina, described here as Atractiella rhizophila. We characterized this species by transmission electron microscopy (TEM), phylogenetic analysis, and plant bioassay experiments. Phylogenetic sequence analysis of isolates and available environmental and reference sequences indicates that this new species, A. rhizophila, has a broad geographic and host range. Atractiella rhizophila appears to be present in North America, Australia, Asia, and Africa and is associated with trees, orchids, and other agriculturally important species, including soybean, corn, and rice. Despite the large geographic and host range of this species sampling, A. rhizophila appears to have exceptionally low sequence variation within nuclear rDNA markers examined. With inoculation studies, we demonstrate that A. rhizophila is nonpathogenic, asymptomatically colonizes plant roots, and appears to foster plant growth and elevated photosynthesis rates.

DOI: 10.1080/00275514.2016.1271689
PubMed: 28402786


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.</title>
<author>
<name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name>
<affiliation wicri:level="2">
<nlm:affiliation>a Department of Plant Soil and Microbial Sciences , Michigan State University , East Lansing , Michigan 48824.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Michigan</region>
</placeName>
<wicri:cityArea>a Department of Plant Soil and Microbial Sciences , Michigan State University , East Lansing </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Toome Heller, Merje" sort="Toome Heller, Merje" uniqKey="Toome Heller M" first="Merje" last="Toome-Heller">Merje Toome-Heller</name>
<affiliation wicri:level="1">
<nlm:affiliation>c Department of Plant Pathology , Ministry for Primary Industries , Auckland 1140 , New Zealand.</nlm:affiliation>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>c Department of Plant Pathology , Ministry for Primary Industries , Auckland 1140 </wicri:regionArea>
<wicri:noRegion>Auckland 1140 </wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Healy, Rosanne" sort="Healy, Rosanne" uniqKey="Healy R" first="Rosanne" last="Healy">Rosanne Healy</name>
<affiliation wicri:level="2">
<nlm:affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Floride</region>
</placeName>
<wicri:cityArea>d Botany and Plant Pathology , University of Florida , Gainesville </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Reid, Chantal" sort="Reid, Chantal" uniqKey="Reid C" first="Chantal" last="Reid">Chantal Reid</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Liao, Hui Ling" sort="Liao, Hui Ling" uniqKey="Liao H" first="Hui-Ling" last="Liao">Hui-Ling Liao</name>
<affiliation wicri:level="2">
<nlm:affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Floride</region>
</placeName>
<wicri:cityArea>d Botany and Plant Pathology , University of Florida , Gainesville </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Aime, M Catherine" sort="Aime, M Catherine" uniqKey="Aime M" first="M Catherine" last="Aime">M Catherine Aime</name>
<affiliation wicri:level="2">
<nlm:affiliation>e Botany and Plant Pathology , Purdue University , West Lafayette , Indiana 47907.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Indiana</region>
</placeName>
<wicri:cityArea>e Botany and Plant Pathology , Purdue University , West Lafayette </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name>
<affiliation wicri:level="2">
<nlm:affiliation>f Environmental Sciences Division , Oak Ridge National Laboratory , Oak Ridge , Tennessee 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>f Environmental Sciences Division , Oak Ridge National Laboratory , Oak Ridge </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2017">2017</date>
<idno type="RBID">pubmed:28402786</idno>
<idno type="pmid">28402786</idno>
<idno type="doi">10.1080/00275514.2016.1271689</idno>
<idno type="wicri:Area/Main/Corpus">000025</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000025</idno>
<idno type="wicri:Area/Main/Curation">000025</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000025</idno>
<idno type="wicri:Area/Main/Exploration">000025</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.</title>
<author>
<name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name>
<affiliation wicri:level="2">
<nlm:affiliation>a Department of Plant Soil and Microbial Sciences , Michigan State University , East Lansing , Michigan 48824.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Michigan</region>
</placeName>
<wicri:cityArea>a Department of Plant Soil and Microbial Sciences , Michigan State University , East Lansing </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Toome Heller, Merje" sort="Toome Heller, Merje" uniqKey="Toome Heller M" first="Merje" last="Toome-Heller">Merje Toome-Heller</name>
<affiliation wicri:level="1">
<nlm:affiliation>c Department of Plant Pathology , Ministry for Primary Industries , Auckland 1140 , New Zealand.</nlm:affiliation>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>c Department of Plant Pathology , Ministry for Primary Industries , Auckland 1140 </wicri:regionArea>
<wicri:noRegion>Auckland 1140 </wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Healy, Rosanne" sort="Healy, Rosanne" uniqKey="Healy R" first="Rosanne" last="Healy">Rosanne Healy</name>
<affiliation wicri:level="2">
<nlm:affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Floride</region>
</placeName>
<wicri:cityArea>d Botany and Plant Pathology , University of Florida , Gainesville </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Reid, Chantal" sort="Reid, Chantal" uniqKey="Reid C" first="Chantal" last="Reid">Chantal Reid</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Liao, Hui Ling" sort="Liao, Hui Ling" uniqKey="Liao H" first="Hui-Ling" last="Liao">Hui-Ling Liao</name>
<affiliation wicri:level="2">
<nlm:affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Floride</region>
</placeName>
<wicri:cityArea>d Botany and Plant Pathology , University of Florida , Gainesville </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Aime, M Catherine" sort="Aime, M Catherine" uniqKey="Aime M" first="M Catherine" last="Aime">M Catherine Aime</name>
<affiliation wicri:level="2">
<nlm:affiliation>e Botany and Plant Pathology , Purdue University , West Lafayette , Indiana 47907.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Indiana</region>
</placeName>
<wicri:cityArea>e Botany and Plant Pathology , Purdue University , West Lafayette </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name>
<affiliation wicri:level="2">
<nlm:affiliation>f Environmental Sciences Division , Oak Ridge National Laboratory , Oak Ridge , Tennessee 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>f Environmental Sciences Division , Oak Ridge National Laboratory , Oak Ridge </wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name>
<affiliation wicri:level="2">
<nlm:affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>b Biology Department , Duke University , Durham </wicri:cityArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Mycologia</title>
<idno type="ISSN">0027-5514</idno>
<imprint>
<date when="2017" type="published">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Africa (MeSH)</term>
<term>Asia (MeSH)</term>
<term>Australia (MeSH)</term>
<term>Basidiomycota (classification)</term>
<term>Basidiomycota (isolation & purification)</term>
<term>Basidiomycota (ultrastructure)</term>
<term>Cluster Analysis (MeSH)</term>
<term>DNA, Fungal (chemistry)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Ribosomal (chemistry)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>DNA, Ribosomal Spacer (chemistry)</term>
<term>DNA, Ribosomal Spacer (genetics)</term>
<term>Endophytes (classification)</term>
<term>Endophytes (isolation & purification)</term>
<term>Endophytes (ultrastructure)</term>
<term>Microscopy, Electron, Transmission (MeSH)</term>
<term>North America (MeSH)</term>
<term>Phylogeography (MeSH)</term>
<term>Plant Roots (microbiology)</term>
<term>Populus (microbiology)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN fongique (composition chimique)</term>
<term>ADN fongique (génétique)</term>
<term>ADN ribosomique (composition chimique)</term>
<term>ADN ribosomique (génétique)</term>
<term>Afrique (MeSH)</term>
<term>Amérique du Nord (MeSH)</term>
<term>Analyse de regroupements (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Asie (MeSH)</term>
<term>Australie (MeSH)</term>
<term>Basidiomycota (classification)</term>
<term>Basidiomycota (isolement et purification)</term>
<term>Basidiomycota (ultrastructure)</term>
<term>Endophytes (classification)</term>
<term>Endophytes (isolement et purification)</term>
<term>Endophytes (ultrastructure)</term>
<term>Espaceur de l'ADN ribosomique (composition chimique)</term>
<term>Espaceur de l'ADN ribosomique (génétique)</term>
<term>Microscopie électronique à transmission (MeSH)</term>
<term>Phylogéographie (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Racines de plante (microbiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>DNA, Fungal</term>
<term>DNA, Ribosomal</term>
<term>DNA, Ribosomal Spacer</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Basidiomycota</term>
<term>Endophytes</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>ADN fongique</term>
<term>ADN ribosomique</term>
<term>Basidiomycota</term>
<term>Endophytes</term>
<term>Espaceur de l'ADN ribosomique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA, Fungal</term>
<term>DNA, Ribosomal</term>
<term>DNA, Ribosomal Spacer</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN fongique</term>
<term>ADN ribosomique</term>
<term>Espaceur de l'ADN ribosomique</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Basidiomycota</term>
<term>Endophytes</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Basidiomycota</term>
<term>Endophytes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Populus</term>
<term>Racines de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Plant Roots</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="ultrastructure" xml:lang="en">
<term>Basidiomycota</term>
<term>Endophytes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Africa</term>
<term>Asia</term>
<term>Australia</term>
<term>Cluster Analysis</term>
<term>Microscopy, Electron, Transmission</term>
<term>North America</term>
<term>Phylogeography</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" qualifier="ultrastructure" xml:lang="fr">
<term>Afrique</term>
<term>Amérique du Nord</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Asie</term>
<term>Australie</term>
<term>Basidiomycota</term>
<term>Endophytes</term>
<term>Microscopie électronique à transmission</term>
<term>Phylogéographie</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Among fungi isolated from healthy root mycobiomes of Populus, we discovered a new endorrhizal fungal species belonging to the rust lineage Pucciniomycotina, described here as Atractiella rhizophila. We characterized this species by transmission electron microscopy (TEM), phylogenetic analysis, and plant bioassay experiments. Phylogenetic sequence analysis of isolates and available environmental and reference sequences indicates that this new species, A. rhizophila, has a broad geographic and host range. Atractiella rhizophila appears to be present in North America, Australia, Asia, and Africa and is associated with trees, orchids, and other agriculturally important species, including soybean, corn, and rice. Despite the large geographic and host range of this species sampling, A. rhizophila appears to have exceptionally low sequence variation within nuclear rDNA markers examined. With inoculation studies, we demonstrate that A. rhizophila is nonpathogenic, asymptomatically colonizes plant roots, and appears to foster plant growth and elevated photosynthesis rates.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">28402786</PMID>
<DateCompleted>
<Year>2018</Year>
<Month>05</Month>
<Day>29</Day>
</DateCompleted>
<DateRevised>
<Year>2018</Year>
<Month>06</Month>
<Day>18</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Print">0027-5514</ISSN>
<JournalIssue CitedMedium="Print">
<Volume>109</Volume>
<Issue>1</Issue>
<PubDate>
<Year>2017</Year>
</PubDate>
</JournalIssue>
<Title>Mycologia</Title>
<ISOAbbreviation>Mycologia</ISOAbbreviation>
</Journal>
<ArticleTitle>Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.</ArticleTitle>
<Pagination>
<MedlinePgn>18-26</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1080/00275514.2016.1271689</ELocationID>
<Abstract>
<AbstractText>Among fungi isolated from healthy root mycobiomes of Populus, we discovered a new endorrhizal fungal species belonging to the rust lineage Pucciniomycotina, described here as Atractiella rhizophila. We characterized this species by transmission electron microscopy (TEM), phylogenetic analysis, and plant bioassay experiments. Phylogenetic sequence analysis of isolates and available environmental and reference sequences indicates that this new species, A. rhizophila, has a broad geographic and host range. Atractiella rhizophila appears to be present in North America, Australia, Asia, and Africa and is associated with trees, orchids, and other agriculturally important species, including soybean, corn, and rice. Despite the large geographic and host range of this species sampling, A. rhizophila appears to have exceptionally low sequence variation within nuclear rDNA markers examined. With inoculation studies, we demonstrate that A. rhizophila is nonpathogenic, asymptomatically colonizes plant roots, and appears to foster plant growth and elevated photosynthesis rates.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Bonito</LastName>
<ForeName>Gregory</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>a Department of Plant Soil and Microbial Sciences , Michigan State University , East Lansing , Michigan 48824.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hameed</LastName>
<ForeName>Khalid</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Toome-Heller</LastName>
<ForeName>Merje</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>c Department of Plant Pathology , Ministry for Primary Industries , Auckland 1140 , New Zealand.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Healy</LastName>
<ForeName>Rosanne</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Reid</LastName>
<ForeName>Chantal</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Liao</LastName>
<ForeName>Hui-Ling</ForeName>
<Initials>HL</Initials>
<AffiliationInfo>
<Affiliation>d Botany and Plant Pathology , University of Florida , Gainesville , Florida 32611.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Aime</LastName>
<ForeName>M Catherine</ForeName>
<Initials>MC</Initials>
<AffiliationInfo>
<Affiliation>e Botany and Plant Pathology , Purdue University , West Lafayette , Indiana 47907.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schadt</LastName>
<ForeName>Christopher</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>f Environmental Sciences Division , Oak Ridge National Laboratory , Oak Ridge , Tennessee 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Vilgalys</LastName>
<ForeName>Rytas</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>b Biology Department , Duke University , Durham , North Carolina 27708.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2017</Year>
<Month>01</Month>
<Day>09</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Mycologia</MedlineTA>
<NlmUniqueID>0400764</NlmUniqueID>
<ISSNLinking>0027-5514</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000349" MajorTopicYN="N">Africa</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001208" MajorTopicYN="N">Asia</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001315" MajorTopicYN="N">Australia</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
<QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D060026" MajorTopicYN="N">Endophytes</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
<QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D046529" MajorTopicYN="N">Microscopy, Electron, Transmission</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009656" MajorTopicYN="N">North America</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="Y">Basidiomycete</Keyword>
<Keyword MajorTopicYN="Y">plant microbiome</Keyword>
<Keyword MajorTopicYN="Y">root endophyte</Keyword>
<Keyword MajorTopicYN="Y">sterile mycelium</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="entrez">
<Year>2017</Year>
<Month>4</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2017</Year>
<Month>4</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2018</Year>
<Month>5</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">28402786</ArticleId>
<ArticleId IdType="doi">10.1080/00275514.2016.1271689</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Nouvelle-Zélande</li>
<li>États-Unis</li>
</country>
<region>
<li>Caroline du Nord</li>
<li>Floride</li>
<li>Indiana</li>
<li>Michigan</li>
<li>Tennessee</li>
</region>
</list>
<tree>
<country name="États-Unis">
<region name="Michigan">
<name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name>
</region>
<name sortKey="Aime, M Catherine" sort="Aime, M Catherine" uniqKey="Aime M" first="M Catherine" last="Aime">M Catherine Aime</name>
<name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name>
<name sortKey="Healy, Rosanne" sort="Healy, Rosanne" uniqKey="Healy R" first="Rosanne" last="Healy">Rosanne Healy</name>
<name sortKey="Liao, Hui Ling" sort="Liao, Hui Ling" uniqKey="Liao H" first="Hui-Ling" last="Liao">Hui-Ling Liao</name>
<name sortKey="Reid, Chantal" sort="Reid, Chantal" uniqKey="Reid C" first="Chantal" last="Reid">Chantal Reid</name>
<name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name>
<name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name>
</country>
<country name="Nouvelle-Zélande">
<noRegion>
<name sortKey="Toome Heller, Merje" sort="Toome Heller, Merje" uniqKey="Toome Heller M" first="Merje" last="Toome-Heller">Merje Toome-Heller</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarRustV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000026 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000026 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarRustV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:28402786
   |texte=   Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:28402786" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarRustV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Tue Oct 27 22:23:40 2020. Site generation: Sun Jan 31 22:19:43 2021